I have had operations and injections to both my hand and I have arthritis in my thumbs and middle figure, due to working on a production line most of my life.
The thing I have grown use to in all them years, is that calluses are not a problem until the skin is broken. It's a natural reaction to using tools on softish skin and builds up to protect the dermis levels.
I have had many football and cricket injuries, that have had me not being able to run, much, because of the pain in my knee. So if I don't run it doesn't hurt.
If it hurts, treat it, if It doesn't, then it should be ok!