You get insulin stacking when you use insulin within the time it takes for the last insulin you took to be fully used by you, not about how many times you change your site.
So if the time is set on your pump to 4 hours for insulin (I believe many are set to 4 hours and this woulda been set up when you got your pump) then you will get stacking if you inject again in less than 4 hours from when you last did.
Or did you mean your insulin is just taking longer to be fully used?